EBM and Clinical Support Librarians@UCHC

Entries categorized as ‘Scholarly Publications’

News, Scientific Literature, Bioinformatics, Search Technologies: MedlineRanker

July 28, 2009 · Leave a Comment

Anyone who works with geneticists and biomedical researchers already knows that learning the language of their science is daunting for a non-scientist to understand. This international community has developed dozens of highly specific databases, data-mining software and cooperative, collective digital libraries for their own use.  In an approximate sense, one could even imagine the mapping of the human genome as one vast wiki.  Clinical care follows the translational research of these investigators.

This month in Nucleic Acids Research, Volume 37-July 1 2009, the Supplement 2: Web Server issue was published, described by Oxford University Press as:

“…the seventh in a series of annual special issues dedicated to web-based software resources for analysis and visualization of molecular biology data. The present issue reports on 112 web servers with a special emphasis on metagenomics, molecular network and pathway analysis, and biological text mining”..


Full-text of the NAR-Supplement 2 is available open-access for anyone in the world to read, on PubMedCentral.

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An article in that special issue attracted my interest, entitled MedlineRanker: flexible ranking of online literature” and written by a group of computational scientists affiliated with the Computational Biology & Data Mining Group of the Max Delbruck Center for Molecular Medicine (MDC) in Berlin.

The six authors describe their project in this way:

We have implemented the MedlineRanker webserver, which allows a flexible ranking of Medline for a topic of interest without expert knowledge. Given some abstracts related to a topic, the program deduces automatically the most discriminative words in comparison to a random selection. These words are used to score other abstracts, including those from not yet annotated recent publications, which can be then ranked by relevance. We show that our tool can be highly accurate and that it is able to process millions of abstracts in a practical amount of time.

Source: Link from Nucleic Acids Research – Vol. 37, Suppl. 2: W141-W146

Please view the four Supplementary Data (note: these open as either Word or Excel documents) that describe search terms used to search  PubMed using the MedlineRanker server.

The illustrations in the article look like a cross between a tag cloud and a Wordle picture.

MedlineRanker is free for use and is available at http://cbdm.mdc-berlin.de/tools/medlineranker.

A list of current research projects from MDC can be viewed at this link.

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In January 2009, Supplement 1 – Datatabase Server Issue was published in  Nucleic Acids Research, Vol. 37 and that is also available online on the PubMedCentral archive.

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The 122 sites listed in the July 2009 NAR supplement will be added to the 1,200 already listed in the Bioinformatics Links Directory which:  “... now expands to almost 1400 unique web servers, databases and resources for computational research in the life sciences. All links are freely accessible to the public, and may be browsed by biological category and research task subcategory. “

For more information on text-mining programs written by scientists from around the world, go to the Bioinformatics Links Directory-Literature: Text Mining page.

Categories: Educational Sites · Medicine 2.0 · News & Medical News · Scholarly Publications · Scholarly Publishing & Open Access · Web 2.0 and Geek Stuff
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News, Scientific Literature, Visualization: Cell Press and Elsevier introduce Article of the Future

July 20, 2009 · Leave a Comment

STM publishers Cell Press and Elsevier ratcheted up the technological ante this month with their announcement on Monday, Jul 20 2009, of a shared project called Article of the Future, which they are funding to provide:

“… an on-going collaboration with the scientific community to redefine how the scientific article is presented online. The project’s goal is to take full advantage of online capabilities, allowing readers individualized entry points and routes through the content, while using the latest advances in visualization techniques“.

Text source: http://beta.cell.com – All rights reserved – Copyright 2009

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Currently available are two “prototypical” articles which the companies have put up in order to solicit feedback about the page and suggestions from the worldwide scientific community about useability and function.

Here’s one nice feature of the demo: “Integrated audio and video [will] let authors present the context of their article via an interview or video presentation and allow animations to be displayed more effectively”.

Below is a screenshot showing visualizations of tables from article Prototype #2, entitled “Identification of Positionally Distinct Astrocyte Subtypes whose Identities Are Specified by a Homeodomain Code” by Christian Hochstim, Benjamin Deneen, Agnes Lukaszewicz, Qiao Zhou and David J. Anderson.

This article was published originally published in the journal Cell (Vol. 133, issue 2 – May 2 2008, p 510-522).

CellPressElesevierJuly 2009collaborationExample

Image Source: http://beta.cell.com/hochstim/inc/hochstim_article.pdf – All rights reserved – Copyright 2009
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Visitors to the Article of the Future page are encouraged to provide direct (anonymous) input about the site using a 10-item online survey.

Thanks to AD for telling me about this.

P.S. This news release was first read on Twitter – Cell Press News around 1oopm today – http://twitter.com/CellPressNews – but the funny thing is, neither of the companies have posted a press release on their official websites yet (as of 3:15pm EST – Jul 20 2009).

Note: Chronicle of Higher Education also wrote about this venture – see entry dated July 20, 2009 at this link.

Categories: Academic Medicine · Educational Sites · Library 2.0 · Medicine 2.0 · News & Medical News · Scholarly Publications · Videos & Podcasts · Virtual Environments · Web 2.0 and Geek Stuff
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News, Medicine 2.0, Current Awareness: The debut of Clinical Reader

July 9, 2009 · 1 Comment

ClinicalReaderMultimedia

.Photo credit: http://www.clinicalreader.com – All rights reserved – Copyright 2009

Clinical Reader, introduced Jun 29 2009 in beta, is getting a lot of buzz* on Twitter, blogs and librarian discussion lists.  Thanks to librarians posting about it on Medlib-L listserv and to Berci for blogging about it.

Following is an excerpt from their About page:

Clinical Reader was brought to life in 2009 by a junior doctor and a small group of forward thinking young tech programmers spread across London and Toronto. The conceptualized idea was to manage clinical information overload and deliver relevant news from an authoritative source on a daily basis.… it is truly quality collection of accessible clinical, scientific and health literature aiming to filter the river of information presented to the online medical community.”

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I noticed that the creators of the site have constructed it using sets of criteria which include journal performance indicators; two of the criteria for inclusion in the site are shown in this screenshot of their FAQ page:

ClinicalReaderFAQ#3and#4

Photo credit: http://www.clinicalreader.com – All rights reserved – Copyright 2009

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There are currently about 3,000 readers who subscribe to the Clinical Reader newsletter.  Anyone can use the site, at no cost.

This is a rich and multi-layered site targeted at medical and dental clinicians.  It can be used to read daily health news, journal scans, searching links for training or educational videos, clinically-oriented podcasts and medical specialties. Site content is divided in three sections: News (links to UK-oriented news), Sections and Multimedia.

Below is a screenshot from Virtual Reality Training for Surgeons (8 minute video), featured this week:

ClinicalReaderVirtualRealityTrainingforSurgeonsScreenshotVideo credit:  http://tinyurl.com/n7c4lu

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There is a page for medical students, medical education and dentisty/oral surgery (among many others).

And links to Del.icio.us, Connotea, Digg and (of course) Twitter.  Finally: a hand-picked list of fourteen Medical Blogs is included, which features a Canadian librarian-blogger, Dean Giustini and Scienceroll blogger, Bertalan Mesko ~ woot for that!

ClinicalReaderCircle

Photo credit: http://www.clinicalreader.com – All rights reserved – Copyright 2009

Best wishes to the creators of Clinical Reader.com, who have rolled out a working website designed to meet the information needs of physicians, by physicians. I look forward to watching this site develop over time.

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* Edit: On July 15, after reading posts from other medical librarians (see EagleDawg blog and Steve Lawson (both dated Jul 13 2009), and other discussions who collectively remind administrators at Clinical Reader to proceed with caution in regard to commercial and copyright laws, to intellectual and graphical property, I think I’m going to retract what I wrote on Jul 9 2009 (above).

And ask Clinical Reader folks to take a look at the Creative Commons site at http://creativecommons.org/ and the doctrine of fair use.


Categories: Libraries or Librarians · Library 2.0 · Medicine 2.0 · News & Medical News · Scholarly Publications · Videos & Podcasts · Web 2.0 and Geek Stuff
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Open Access, Digital Libraries, E-Archives: Virtual Classics, Textbooks and Other Gems

June 5, 2009 · 5 Comments

This is the 300th post on the EBM & Clinical Support Librarians@UCHC blog.  Woot… please drop me a line and let me know how I’m doing!

Medical and dental students have one more exam to complete, and then will have a few well-deserved weeks of vacation.  They may even have time to read for pleasure.

A brief article entitled “Textbook Death Watch posted on Tech & Learning (May 1 2009) caught my eye, and that prompted a search-expedition for open access libraries of digital works available to anyone to use.  The list below is not meant to be inclusive… only representative.

A related article on the Wired section (free to all) from the Chronicle of Higher Education (May 13 2009) discusses the migration from ‘real’ books to digital archives at University of Oklahoma: at this link.  An article published in the Washington Post (May 19 2009) about the scope, reach and legal considerations of Google Books is worth a read.

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Digital Collections from Non-Academic Sources

  • A classic and long-lived source for E-Books: the Project Guttenberg website where 28,000 online books are available at no cost.
  • WOWIO is a site for free texts, comics and graphics novels.  Their About page states that it is  …the only source where readers can legally access high-quality copyrighted ebooks from leading publishers for free. Readers have access to a wide range of offerings, including works of classic literature, college textbooks, comic books, and popular fiction and non-fiction titles.

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A Collection of Digital or E-Text Collections hosted by Academic Institutions

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A Few Audio Book-Sources

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Recommendations by Readers or Bloggers

  • A list of “Life Changing Books” recommended by readers came from OpenCulture (published Aug 19 2007).  Note:  The titles are linked to Amazon but some of these titles on the  list are in the public domain and available through several of the E-book sites shown above (i.e., open access).
  • Good Reads is a valuable website – type in a book title or author, and the site will “suggest” similar works.  For example, here is a list of novels about “Magical Realism” novels suggested by readers.

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Hard to Describe Sites

  • Dreaming Methods describes itself as “a fusion of writing and atmospheric new media that explores digital storytelling, imaginary memories and dream-inspired states“.  And their List of Links to other literary sites is worth visiting.
  • We Tell Stories (digital fiction from Penguin Books UK) is part novel, part Google Maps.

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Finally, two sites not for enjoying literature as much as for savoring historical images.

PittsburghSkyscapeImage Credit:  http://www.lifeinwesternpa.org – All rights reserved – Copyright 2009

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  • Calisphere (a digital library project for the State of California, hosted by the University of California-Berkeley), which is where I found this beautiful image (circa 1945):

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Image courtesy of http://www.calisphere.universityofcalifornia.edu/ – All rights reserved – Copyright 2009

Categories: Educational Sites · Journalism · Libraries or Librarians · Library 2.0 · News & Medical News · Scholarly Publications · Scholarly Publishing & Open Access · Web 2.0 and Geek Stuff
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News, Scholarly Communications, Journals: Keep up to date with ticTOCS

April 29, 2009 · 3 Comments

Scientists, clinicians and students who need to read continually in their specialty fields to stay current frequently express frustration over the amount of time and efforts needed to keep up each month.

Our collection management librarian at UCHC recently told me about this great site:  ticTOCs where one can… “ find 12,415 scholarly journal Table of Contents (TOCs) from 436 publishers “.

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TicTocs

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ticTOCs is a journal-alerting, table of contents service based in the UK.  This service is free; registration with the site is required to set up individual alerting preferences.

Following is an excerpt from the ticTOCS “About” page:

The ticTOCs Journal Tables of Contents service makes it easy for academics, researchers, students and anyone else to keep up-to-date with newly published scholarly material by enabling them to find, display, store, combine and reuse thousands of journal tables of contents from multiple publishers. With ticTOCs, it only takes a tick or two to keep up to date.”

The ticTOCs Consortium consists of: the University of Liverpool Library (lead), Heriot-Watt University, CrossRef, ProQuest, Emerald, RefWorks, MIMAS, Cranfield University, Institute of Physics, SAGE Publishers, Inderscience Publishers, DOAJ (Directory of Open Access Journals), Open J-Gate, and Intute.”


Next, a screenshot of the link where one can register for the service, and then set preferences for receiving table of contents from individual journals:

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Today, I did a search for “hepatology” on ticTOCs; here is a photo of the results:

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Text and image credits: ticTocs – http://www.tictocs.ac.uk/ – All rights reserved – Copyright 2009

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Wow! Can it get any easier to sign up to begin receiving table of contents-alerts from individual scientific publications?

Please give ticTOCs a try.  (And thanks to AD!)

Categories: Educational Sites · Library 2.0 · News & Medical News · Scholarly Publications · Scholarly Publishing & Open Access · Web 2.0 and Geek Stuff
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Reference for Academic-Health Science Libraries, Collection Management, Open Access: Peripheral Finds

April 17, 2009 · Leave a Comment

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Having been hunkered down in my cubicle for the past month updating the library’s Reference Collection, I am now ready to step back into the light and offer up Part #3 of Reference Ruminations (if you missed the first two postings, here’s part 1 and part 2).

uchclibraryrefstacks1

Digging around looking for new or updated titles is part of the fun of collection management.  Less fun is staying within one’s $$ budget while keeping a current health science reference collection to a constant size. Migration from print to online format continues at a fast pace in 2009.

Trolling” or “trawling” (if these are the correct terms) describes the specialized peripheral vision belonging to librarians (or scientists) that requires one to never pass up examining a new book, journal article or website (or whatever else looks interesting – the shoe section at Marshalls also qualifies) even though we weren’t specifically looking for that type of information.

An eclectic list follows… they represent sites that I wasn’t exactly looking for – but turned out to offer timely, focused reporting on a variety of health-related data, policy or statistical information that I couldn’t ignore. The publishers or data-gatherers linked below include nonprofit organizations, academies, public or social policy institutions, government agencies, charitable foundations and others.  Most (but not all) of this content is freely distributed.

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It is my hope that you will find information of value to your research from the links below.

  • Research efforts conducted or sponsored by NAP’s Institute of Medicine (IOM) is organized into “seventeen health topic areas: mental health, child health, food and nutrition, aging, women’s health, education, public policy, health care and quality, diseases, global health, workplace, military and veterans, health sciences, environment, treatment, public health and prevention, minority health.”  Link to IOM topic pages here.  Many of their publications are available online at no cost.
  • The LeapFrog Group has provided data on hospital safety ratings by state on their website, openly available at this link. MD-Consult had this to say about the data, published Apr 15 2008:  Hospitals are barely meeting quality and efficiency standards, according to a survey issued on April 15 by the Leapfrog Group, an organization made up of some of America’s largest employers.”
  • Epidemiologists and MPH students use the longitudinal reports, surveys and other data compiled by the staff at National Center for Health Statistics (NCHS).  Researchers can register with NCHS to download actual datasets for research purposes at no charge; see CDC Wonder for more information about these files.
  • A major charitable organization for promoting health and social justice worldwide, The MacArthur Foundation website could take hours to examine. One place to begin for those interested in demography or epidemiology is their domestic Research Networks page.

  • The Childrens’ Defense Fund has an extensive digital library of data, statistics and policy synthesis reports on American children, their health, families and communities.  In December 2008, CDF published a 80-page report on “The State of America’s Children“, available online (link to the 80-page PDF).
  • A particularly useful site for recent data and policy reports on American families at risk is the Knowledge Center from the Annie E. Casey Foundation, a nonprofit organization whose stated mission is “helping vulnerable kids and families succeed”.  As an example, the Kids Count page allows one to search for demographic or health information using standardized key indicators (such as access to housing, poverty, birth outcomes, access to early childhood education, uninsured families and other community and socioeconomic factors) across states.

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Since I was taking photos anyway, below are a few more views of the library.  The main floor of the library had a major renovation, completed in 2005.  In 2008, some areas of the 2nd floor were renovated.

These are the so-called Barney Chairs (as in, plush, overstuffed and really purple), positioned next to the Reference stacks for those who like to sit comfortably by the windows to read:

uchclibrarychairs2

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The 2nd floor of the library is a popular quiet study space.

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A library plant, Crown of Thorns (euphorbia milii), flowered this week.

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All Photos: Courtesy of UCHC – All rights reserved – Copyright 2009


Categories: Academic Medicine · Educational Sites · Healthcare-Administration · Libraries or Librarians · Library 2.0 · News & Medical News · Other Stuff · Scholarly Publications · Scholarly Publishing & Open Access · Teaching-and-Learning in Medicine
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News, Scholarly Communications, Scientific Literature: The DBIO 100

April 14, 2009 · Leave a Comment

Librarians like to network (and socialize) and one of their major professional associations to consider joining is Special Libraries Association SLA is a non-profit organization representing the interests of librarians and knowledge managers working for commercial corporations, law firms, governmental agencies, non-profit organizations, biomedical, technical or academic institutions, museums, law firms, etc.

SLA sponsors a section called Division of BioMedical & Life Sciences (or DBIO), which is described on their blog as a “community for biomedical and life science librarians and information professionals“.

A poll of almost 700 DBIO members was conducted electronically in late 2008 and early 2009, asking them to identify the “100 most influential journals of Biology & Medicine over the last one hundred years“.  Every section member was eligible to vote.

The stated goal was for the final vote “ to yield a balanced assortment of 33 or 34 journals in three areas:  Clinical Medicine & Allied Health, Molecular & Cell Biology and Natural History “.

The 12-page summary report was written by Tony Stankus, Life Sciences Librarian and Science Liaison at University of Arkansas-Fayetteville, who recruited the expert teams, arbitrated disputes about disciplinary boundaries, and served as final editor.

This venerable list, “The DBIO 1oo“, was made public in January 2009, and is available – free, online – at this link (note: PDF).  The list of journals is also shown on the March 2009 SLA press release about the project.

The SLA DBIO section will hold an award ceremonies for publishers and editors of this special group of journals, scheduled to be held during the 2009 SLA National Conference, June 14-17, Washington, D.C.

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The official DBIO blog is an interesting information source, too.

Categories: Libraries or Librarians · Library 2.0 · News & Medical News · Scholarly Publications · Scholarly Publishing & Open Access
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News, Academic-Health Science Libraries, Collection Management: Ruminations on Reference – Part 2: Using the (Real) or (Virtual) Library Collections

March 30, 2009 · Leave a Comment

This is Part 2 of a 3-part post about managing and maintaining a core Reference collection, and the people who use resources available from University of Connecticut Health Center.

As a state-funded public institution, and the only medical library in Connecticut open to the general public, Lyman Maynard Stowe Library is staffed 94-hours per week and provides an open-door policy to anyone, with free access to the university’s collection of subscription databases and health science collection.

Reference librarians and public services staff assist many different types of information seeking folks who come in to use the library: college or graduate students from other area institutions, student nurses, nursing faculty or other allied health professionals, hospital patients or out-patients, family members, high school students, trial attorneys, paralegals, medical writers (and anyone else).  Workstations are available for searching subscription databases, journals, e-textbooks, software, etc. or to access the large online collections and databases from UConn’s Homer Babbidge Library (the main library in Storrs, CT).

There are only a few caveats: users must be on-site in order to access the collections (i.e., no remote access with a current UConn ID), and doing medical research (i.e., not playing computer games for hours using a UCHC workstation).  Printing out full-text articles costs seven cents per page.

Some of the people who visit do so without asking for assistance from staff for finding specific information; some do ask for brief instructions on choosing what to search and how to “best” search it.

Other visitors are very motivated to learn the mechanics of searching Medline (PubMed) effectively from a library professional, which is great… generally in 40 minutes we can demonstrate and teach just about anyone how to search effectively, or introduce them to MedlinePlus.gov.

And there are a few who just won’t touch a computer to find the medical information they’re seeking.  There are varied reasons for this: they may not have computing skills, or have physical impairments such as limited vision or hearing, or  low-mobility.  Some would be better served in another language than English.  And some just don’t want to spend the time to learn how to search online.  A few have just received a bad medical diagnosis and are visibly upset… not a good time to start working on a medical research project.  So the print Reference collection is a resource that they can use (without help, if that is their choice).

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A different divide for our general library users is temporal in nature. Because the library is open seven days per week from 700am to 1100pm during the week, a “day” staff and a “evening/night” staff is required.  How do we best serve those who come here in the daytime hours (when professional staff is here) versus those who use the collections and physical building during evening, night or during weekend hours (when one evening reference librarian is available)? Recently I asked our evening librarian (whose name is John) for input on updating the Reference collection; his response was: “There are plenty of people use the library between 600pm and 10 pm”.   They typically are UConn MPH graduate students, patients or family members  and anyone who has to visit after their workday is over.

He also noted that many of the after-500pm crowdgoes straight to the Reference books… not to the computer“.

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There are standard (anticipated) sets of questions which librarians are accustomed to be asked at Reference.  First to be considered: is this user trying to connect while on-campus as in there in real-life - or are they connecting digitally?  In other words, did they walk through the (real) front door of the UCHC building on their own two feet, or did they use their mouse to click into the library home page?

Does it matter to them?  Does it matter to the librarians Sure! There are more than 4,000 people working in the building every day.  We (i.e. the librarians) aim to serve many different research needs seven days per week.

Here is a list of “composite Reference questions” which public services staff do hear, and answer, on a frequent basis:

  • How do I know if you have it? Users who haven’t visited a library in a long time will find the old card catalog long gone… and may not know about – or embrace the utility of – an online catalog. Many graduate students in the MPH or MSN programs are returning adult learners who haven’t been actively using an academic library in decades.  Some of the faculty are still mourning the disappearance of the card catalog. Knowing how to look, as well as where to look is crucial.
  • One of the most common questions that reference staff answers daily is: I think the library owns this journal or textbook, but where is it?  It could be online, or on the shelf depending on the date of the publication, the choices of the producer of the information, the budget which was available to the library at the time of publication, or it could be available by request from another library (interlibrary-loan). Digital availability is a decision made by publishers who determine what sources to make available electronically as well as basing their fees on market demand, institutional (versus individual) usage and electronic access charges.  It is a fallacy to think that because a journal or book has gone online, it represents a cost-savings for the library.  Many times, the electronic version is more costly than buying a print edition due to hardware management, storage requirements, staff to manage collections and administer systems… none of these are “free”.
  • For Those who do not Compute. It is no longer possible to actually walk into the journals-stacks area to find the volume and issue that is needed, because in many cases, those current issues are now only available digitally.  But there are still plenty of people who do just that.  These users need the librarians’ help to make that leap, and a major concern is that generations of library users are missing essential information because they’ve not learned to effectively employ the tools of the digital library.  These users may not know how to search online.  They may be unaware of the deep investment of digital resources made available to them online.  Some do know about the electronic collections, but don’t possess the technical skills or knowledge base (or confidence) to effectively search online for them.  They are traditional users who still need real books and book-stacks to browse in. This isn’t meant to be “age-discriminatory” because there are many library users who are over 50+ years of age who’ve fully made that leap from in-print to digital format, the so-called “early adopters”.
  • The Digital Natives. Having said the above, I’ve yet to meet and work with any 23-year old student who can’t or just won’t use the digital resources of an academic library.  They grew up with a PC and a mouse in their hands.  Their concern is more likely to be, “If it’s not online, I don’t need it“.  Fair enough – we’ll try to supply it online for you.
  • Those who do compute but are not searching expertly. Here’s a scene playing out in the library lately:  Users who are technologically-savvy but whose first choice (sometimes their only choice) is to use Google or Google Scholar to search our collections while standing in the real library.  Eek! Google-only searchers end up bypassing our integrated collections of databases and limiting their research retrievals to what they can “google” because they are not searching in the “best” places.  Consequently they miss out on accessing a huge body of clinical information.  They would be better served by searching Medline or Scopus or other subscription resources that they are literally standing right next to in this building.
  • Call me. Librarians are generally user-friendly, customer service oriented people whose main goal at work is to connect the user to the information which they require, delivered in an efficient and timely way.  When this model doesn’t work, users can and should initiate a conversation to ask for assistance… this could be via telephone, email, in-person at the Reference desk.  How can we (librarians) help library users – either in the building or off-campus – when they don’t find what they need but then also do not ask for assistance on how to search or which sources are best to answer their research questions?
  • Digital Migration. A journal or textbook may go out of print at any time in favor of digital access only.  As an example, this library pays for access to roughly 1,100 electronic textbooks currently. It is an individual decision by the collection management librarians as to whether to continue to purchase a paper textbook if the digital version is available.  Some core medical textbooks – such as Nelson’s Pediatrics, Hurst’s The Heart and especially, Harrison’s Principals of Internal Medicine – are heavily used in both formats.  It is a judgement call to be made by the librarians, weighing cost versus availability versus expected usage.  Hint: Networked version of standard medical textbooks generally get funding.

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Here are a few other things librarians ruminate over.

  • Library users researching topics outside the scope of health sciences and medicine should search the resources assembled by our main library.  Access is only a few mouse-clicks away, including 240+ academic subject databases and a vast journal collection available online.  How many times have I said to someone, “Just go to Storrs”.  The response sometimes is “I don’t want to drive there!”.  (Um.  There’s no need to drive there in a car to access these resources if you are affiliated or are on-site.)
  • A declining gate count doesn’t mean people are using the library less. We as librarians need to provide better statistical reporting and become more effective at explaining and promoting library services to senior managers in a time of budget stressors.  Do university or hospital administrators understand that the number of times that people actually walk in the front door into the real library (what librarians call the ‘gate count’) declines as we become more successful at providing virtual access to periodicals, textbooks, databases and teaching materials?
  • Information literacy is a concern because some of our users coming in the door may not speak or read in the English language well enough to understand what medical information is available here. But lbrarians have found online sources for patient-education materials in Spanish, Polish or other languages… but if those users didn’t ask Reference staff for assistance, it isn’t likely they could find those sources on their own.
  • We never see you anymore. How do library staff measure users’ satisfaction (or lack of satisfaction) with our collections and services, if we aren’t in the same building to interact face-to-face?  How do our remote users ask for help with searching or finding, if they are sitting at their home or office 20 miles from the reference librarians?  Or if they working at 1:oo am, when there’s no staff in the library but they are searching?  What are quantifiable, credible ways to measure the results of remote library users that we don’t get to interact with face-to-face?  This is a long-term issue for library managers.  There are statistics about hits on subscription journal titles or databases, quantified by date and time, but that data is only a part of the answer.

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If you’ve read this far… thank you for hanging in there to read what has unexpectedly become something of an essay! The last and final part of the Musings on Reference will appear next week, with a list of open-access documents or reports which I found while looking up “other stuff” for the 2009 Reference collection update.

Categories: Academic Medicine · Instruction · Libraries or Librarians · Medicine 2.0 · News & Medical News · Other Stuff · Scholarly Publications · Scholarly Publishing & Open Access · Web 2.0 and Geek Stuff
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News, Scholarly Publishing, Digital Archives: JSTOR and Ithaka Merger Announced

January 29, 2009 · Leave a Comment

Two important interdisciplinary digital archival sites – JSTOR and Ithaka – announced their merger on Jan 25 2009.  Link here to the press release. The new, combined enterprise will be named Ithaka.  No word yet on when the switchover of archives will take place.

JSTOR is a subscription database.  It is a unique multidisciplinary archive, which in this medical library is a treasure to have access to…. economics, linguistics, criminal justice and entomology are just a few topical searches I’ve done for faculty or students, over time, which come to mind.  If such a thing can be said about an archives holding back-issue collections of 2,100,000 full-text articles in periodicals spanning fifty academic disciplines, it is a place to spread one’s research wings and soar through the atmosphere like a bird.  5,300 academic institutions worldwide participate in JSTOR currently.  New content is added frequently.

Here is some basic information about these two organizations, taken from the websites:

  • JSTOR is an independent not-for-profit organization dedicated to helping the scholarly community discover, use, and build upon a wide range of intellectual content in a trusted digital archive. JSTOR offers a high-quality, interdisciplinary archive to support scholarship and teaching. It includes archives of over one thousand leading academic journals across the humanities, social sciences, and sciences, as well as select monographs and other materials valuable for academic work. The entire corpus is full-text searchable, offers search term highlighting, includes high-quality images, and is interlinked by millions of citations and references. The archive is unique in terms of scale, content, and the significant use it receives. It is recognized specifically for: offering a unique, interlinked aggregation of scholarly works, facilitating interdisciplinary and historical research, exemplary standards for digitization and completeness, interfaces and functionality that support academic use, highly reliable access, long-term preservation. (Text excerpt from http://jstor.org)
  • Ithaka is an independent not-for-profit organization with a mission to accelerate the productive uses of information technologies for the benefit of higher education worldwide. Ithaka provides research, strategic, and administrative services to promising not-for-profit projects, helping them to develop sustainable organizational and business models. It also works with established institutions that are rethinking the way they serve their core constituents. Ithaka is currently incubating several initiatives: NITLE, a collaborative effort to promote emerging technologies in liberal arts contexts; and Portico, a permanent archive of 8,200 electronic scholarly journals ad 4,600 e-books and Aluka, which is becoming a part of JSTOR.”  (Text excerpt from http://ithaka.org)



Categories: Libraries or Librarians · News & Medical News · Scholarly Publications · Scholarly Publishing & Open Access
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